Sustainable Onshore Lobster Aquaculture
Sustainable Onshore Lobster Aquaculture

A Tale of Two Lobsters—Transcriptomic Analysis Reveals a Potential Gap in the RNA Interference Pathway in the Tropical Rock Lobster (Panulirus ornatus)


RNA interference (RNAi) has been widely utilised in many invertebrate models since its discovery, and in a majority of instances presents as a highly efficient and potent gene silencing mechanism. This is emphasized in crustaceans with almost all taxa having the capacity to trigger effective silencing, with a notable exception in the spiny lobsters where repeated attempts at dsRNA induced RNAi have demonstrated extremely ineffective gene knockdown. A comparison of the core RNAi machinery in transcriptomic data from spiny lobsters (Panulirus ornatus) and the closely related slipper lobsters (Thenus australiensis), where silencing is highly effective) revealed that both lobsters possess all proteins involved in the small interfering and microRNA pathways, and that there was little difference at both the sequence and domain architecture level. Comparing the expression of these genes however demonstrated that T. australiensis had significantly higher expression in the transcripts encoding proteins which directly interact with dsRNA when compared to P. ornatus, validated via qPCR. These results suggest that low expression of the core RNAi genes may be hindering the silencing response in P. ornatus, and suggest that it may be critical to enhance the expression of these genes to induce efficient silencing in spiny lobsters.


Research Hub Investigator(s)
Publication Year
Banks, T.M.; Wang, T.; Fitzgibbon, Q.P.; Smith, G.G.; Ventura, T. A Tale of Two Lobsters— Transcriptomic Analysis Reveals a Potential Gap in the RNA Interference Pathway in the Tropical Rock Lobster Panulirus ornatus. Int. J. Mol. Sci. 2022, 23, 11752.
Link to this Publication
Back to our Publication List
Sustainable Onshore Lobster AquacultureSustainable Onshore Lobster Aquaculture
The ARC Research Hub for Sustainable Onshore Lobster Aquaculture is funded by the Australian Government through the Australian Research Council Industrial Transformation Research Program. 

For more information about the Research Hub please contact us at or phone +61 3 6226 8268.
Australian Research CouncilInstitute of Marine and Antarctic StudiesUniversity of TasmaniaOrnatasUniversity of Sunshine CoastPFG GroupUniversity of New Zealand
Copyright 2024 ARC Research Hub for Sustainable Onshore Lobster Aquaculture.
Top linkedin facebook pinterest youtube rss twitter instagram facebook-blank rss-blank linkedin-blank pinterest youtube twitter instagram